| MISSA | Manpower Information Systems Support Activity | |
| MISSE | Materials International Space Station Experiment | |
| MISSG | Minimally Invasive Spine Study Group | |
| MISSHAP | Monitoring of Intoxicated Students Support and Health Assessment Program | |
| MISSI | Multilevel Information System Security Initiative | |
| MISSI | Monthly Integrated Survey of Selected Industries | |
| MISSINGNO | Missing Number | |
| MISSION | Measurable Interactive Sustainable Systematic Innovative Observable Negotiable | |
| MISSION | Michigan Itinerant Shelter System Interdependent Out of Necessity | |
| MISSIS | Minnesota Interactive Statistical System for Instruction in Sociology | |
| MISSIS | Minnesota Interactive Statistical System for Instruction in Sociology | |
| MISSO | Management Information Systems Student Organization | |
| MISSO | Manpower Information Systems Support Office | |
| MISSS | Maneuver Intensity Smoke Sparkle Self | |
| MIST | Missile Integrated Stage Technology | |
| MIST | Modular Interoperable Surface Terminal (within CARS) | |
| MIST | Minimally Invasive Surgery Training | |
| MIST | Mitochondria Investigation and Suppression Team | |
| MIST | Mental Interpretation Simultaneous Transfer | |
| MIST | Mobile Infantry Stealth Technology | |
| MIST | Minimum Impact Suppression Tactics | |
| MIST | Mars Impactor Science Trial | |
| MIST | Motivational Inspirational Supervisory Training | |
| MIST | Massachussetts Institute of Santaland Technology | |
| MIST | Morbid Insomniacs Short Topics |
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